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Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4+ T cell ... 2 Introduction 2 Results 3 Identification of HLA-DR1 binding peptides from SARS-CoV-2 3 Immunogenicity of HLA-DR1 binding peptides from SARS-CoV-2 3 Structural definition of SARS-CoV-2 epitopes presented by HLA-DR1 7 S486–505: FNCYFPLQSYGFQPTNGVGY 7 S511–530: VVLSFELLHAPATVCGPKKS 8 S761–775: TQLNRALTGIAVEQD 8 M176–190: LSYYKLGASQRVAGD 8 nsp31350–1364: KSAFYILPSIISNEK 8 nsp146420–6434: LDAYNMMISAGFSLW 8 Spike-derived SARS-CoV-2 HLA-DR1 epitopes have mutated in viral variants 10 Omicron (BA.1) mutations result in a loss of recognition of two structurally defined HLA-DR1 epitopes 10 Viral variant mutations directly alter TCR-facing residues 11 A single viral variant mutation can induce a complete register shift in HLA-DR1 presentation 11 Discussion 11 Limitations of the study 13 Supplemental information 14 Acknowledgments 14 Author contributions 14 Declaration of interests 14 Acknowledgments 14 References 14 STAR★Methods 18 Key resources table 18 Resource availability 21 Lead contact 21 Materials availability 21 Data and code availability 21 Experimental mode

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Language

UND

Category

nonfiction