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Thriving beneath olive trees: The influence of organic farming on microbial communities 1 1 Introduction 1 2 Material and methods 2 2.1 Sample collection 2 2.2 DNA extraction and quantitative PCR (qPCR) 2 2.3 Illumina sequencing and data processing 4 2.4 α-diversity, β-diversity and differential abundance analysis 4 2.5 Metabolic functions prediction 4 2.6 Microbial co-occurrence network construction 4 2.7 Prediction of fungal guilds 4 3 Results 4 3.1 Effect of agricultural management on soil: physicochemical parameters and microbial biomass 4 3.1.1 Soil physicochemical parameters 4 3.1.2 Rhizosphere microbial biomass 4 3.2 General characteristics of sequenced datasets 5 3.3 Sheep manure amendment differently affects bacterial and fungal communities 5 3.4 Influence of soil management on the taxonomical profile of the olive rhizosphere 5 3.5 Two main taxa in the endosphere taxonomical profiles: Actinophytocola and Ascomycota 5 3.6 Fungal guilds 7 3.7 Inferred metabolic functions 7 3.8 Opposite effect of soil management on co-occurrence networks in both compartments 7 3.9 DATA AVAILABILITY 7 4 Discussion 7 5 Conclusions 12 Funding 12 CRediT authorship contribution statement 12 Declar

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EN

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nonfiction