About this document
A Fully Automated Pipeline For Quantitative Genotype Calling From Next Generation Sequencing Data in Autopolyploids by michelrodrigues is a document available to read on EtoBox.
The document presents VCF2SM, a Python script designed to automate quantitative genotype calling from next-generation sequencing data specifically for autopolyploid species. It integrates sequencing depth information from VCF files and the SUPERMASSA software, addressing challenges in distinguishing heterozygous classes based on allele dosage. The software was successfully tested on GBS data from polyploid species such as alfalfa and potato, showing its potential to enhance genetic studies in these organism
- Author
- michelrodrigues
- Language
- EN