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Genome-wide identification and expression analysis of the cucumber PP2C gene family by Guobin Zhang; Zeyu Zhang; Shilei Luo; Xia Li; Jian Lyu; Zeci Liu; Zilong Wan; Jihua Yu is a Biochemistry, Genetics and Molecular Biology article available to read on EtoBox.

What is Genome-wide identification and expression analysis of the cucumber PP2C gene family about?

## Background: Type 2c protein phosphatase (pp2c) is a negative regulator of aba signaling pathway, which plays important roles in stress signal transduction in plants. however, little research on the pp2c genes family of cucumber (cucumis sativus l.), as an important economic vegetable, has been conducted. ## Results: This study conducted a genome-wide investigation of the cspp2c gene family. through bioinformatics analysis, 56 cspp2c genes were identified in cucumber. based on phylogenetic analysis, the pp2c genes of cucumber and arabidopsis were divided into 13 groups. gene structure and conserved motif analysis showed that cspp2c genes in the same group had similar gene structure and conserved domains. collinearity analysis showed that segmental duplication events played a key role in the expansion of the cucumber pp2c genes family. in addition, the expression of cspp2cs under different abiotic treatments was analyzed by qrt-pcr. the results reveal that cspp2c family genes showed different expression patterns under aba, drought, salt, and cold treatment, and that cspp2c3, 11-17, 23, 45, 54 and 55 responded significantly to the four stresses. by predicting the cis-elements in th

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Author

Guobin Zhang; Zeyu Zhang; Shilei Luo; Xia Li; Jian Lyu; Zeci Liu; Zilong Wan; Jihua Yu

Published

2022

Language

EN

Field

Biochemistry, Genetics and Molecular Biology (Life Sciences)