Can I read OpenCL Smith-Waterman for Cancer Genomics on EtoBox?

OpenCL Smith-Waterman for Cancer Genomics by robthomas1 is a document available to read on EtoBox.

What is OpenCL Smith-Waterman for Cancer Genomics about?

1. The document describes an implementation of the Smith-Waterman algorithm in OpenCL for GPUs to efficiently align short query sequences to long reference sequences, as needed for cancer research. 2. Key aspects of the implementation include online computation to process sequences of millions of nucleotides, parallelizing across query sequences, and overlapping data transfers and kernel execution. 3. Performance tests on NVIDIA GPUs show speedups of up to 14.5x over CPU implementation and ability to ef

Author

robthomas1

Language

EN