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What is Whole Genome Alignment with MUMmer about?

This document discusses genome alignment using MUMmer. MUMmer is a system that can align whole genomes in linear time using suffix trees, longest increasing subsequence algorithms, and Smith-Waterman alignment. The document outlines MUMmer version 1.0 and 2.0, describing their algorithms and improvements. MUMmer 1.0 finds maximal unique matches between genomes and uses longest increasing subsequence to output alignments, while MUMmer 2.0 clusters matches and includes tools like NUCmer for contig alignment a

Author

Samir Sabry

Language

EN