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FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data by Mieszko P Manijak; Henrik B Nielsen is a Medicine article available to read on EtoBox.

What is FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data about?

## Background Although, systematic analysis of gene annotation is a powerful tool for interpreting gene expression data, it sometimes is blurred by incomplete gene annotation, missing expression response of key genes and secondary gene expression responses. These shortcomings may be partially circumvented by instead matching gene expression signatures to signatures of other experiments. ## Findings To facilitate this we present the Functional Association Response by Overlap (FARO) server, that match input signatures to a compendium of 242 gene expression signatures, extracted from more than 1700 __Arabidopsis__ microarray experiments. ## Conclusions Hereby we present a publicly available tool for robust characterization of __Arabidopsis__ gene expression experiments which can point to similar experimental factors in other experiments. The server is available at http://www.cbs.dtu.dk/services/faro/.

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Author

Mieszko P Manijak; Henrik B Nielsen

Publisher

BioMed Central; Springer (Biomed Central Ltd.); London: Biomed Central, 2008-; Publons; Springer Science and Business Media LLC; Society for Mining, Metallurgy and Exploration Inc. (ISSN 1756-0500)

Published

2011

Language

EN

Field

Medicine (Health Sciences)