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Genome-wide genetic variation and comparative transcriptome analyses of citrus mutant Jedae-unshiu and wild-type Citrus unshiu by Chang-Ho Eun; In-Jung Kim is a Agricultural and Biological Sciences article available to read on EtoBox.

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## Miyagawa-wase' mandarin (Citrus. unshiu Marc. cv. Miyagawa-wase) is one of the most widely cultivated citrus varieties in Korea. Previously, we used γ-irradiation to develop new citrus varieties by mutation breeding, a useful tool for increasing genetic diversity in a short time. One of the new citrus varieties we generated, Jedae-unshiu, produces uniquely shaped fruit with vertical troughs on the flavedo. Although comparative analyses of genome-wide variation and transcriptomics have been reported for seedless or color-change citrus variants, little is known regarding genetic variants linked to morphological variation in citrus fruits. In this study, genome-wide single nucleotide polymorphisms (SNPs) and insertion/deletion (InDel) variants were identified in Jedae-unshiu by whole-genome re-sequencing and subjected to functional annotation by gene ontology (GO) analysis. The results show that InDel-containing genes are more highly represented in the GO database than SNP-containing genes. In addition, we compared Jedae-unshiu and wild-type control transcriptomes to identify candidate genetic determinants of the unique fruit phenotype of Jedae-unshiu. A total of 641 unique, diffe

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Author

Chang-Ho Eun; In-Jung Kim

Publisher

Springer Science and Business Media LLC

Published

2023

Language

EN

Field

Agricultural and Biological Sciences (Life Sciences)