About this document
Pathogen.jl: Epidemic Modeling in Julia by Abib Faye is a document available to read on EtoBox.
This document introduces Pathogen.jl, a Julia package for simulating and performing Bayesian inference on transmission network individual level models (TN-ILMs) of infectious disease spread. TN-ILMs extend the individual level model framework to jointly model transmission networks, event times, and model parameters. The document details strategies for Markov chain Monte Carlo inference of TN-ILMs implemented in Pathogen.jl, and provides an example simulation and inference using the package.
- Author
- Abib Faye
- Language
- EN