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S3QL: A distributed domain specific language for controlled semantic integration of life sciences data by Helena F Deus; Miriã C Correa; Romesh Stanislaus; Maria Miragaia; Wolfgang Maass; Hermínia de Lencastre; Ronan Fox; Jonas S Almeida is a Biochemistry, Genetics and Molecular Biology article available to read on EtoBox.
What is S3QL: A distributed domain specific language for controlled semantic integration of life sciences data about?
## Background The value and usefulness of data increases when it is explicitly interlinked with related data. This is the core principle of Linked Data. For life sciences researchers, harnessing the power of Linked Data to improve biological discovery is still challenged by a need to keep pace with rapidly evolving domains and requirements for collaboration and control as well as with the reference semantic web ontologies and standards. Knowledge organization systems (KOSs) can provide an abstraction for publishing biological discoveries as Linked Data without complicating transactions with contextual minutia such as provenance and access control. We have previously described the Simple Sloppy Semantic Database (S3DB) as an efficient model for creating knowledge organization systems using Linked Data best practices with explicit distinction between domain and instantiation and support for a permission control mechanism that automatically migrates between the two. In this report we present a domain specific language, the S3DB query language (S3QL), to operate on its underlying core model and facilitate management of Linked Data. ## Results Reflecting the data driven nature of our ap
Who reads S3QL: A distributed domain specific language for controlled semantic integration of life sciences data?
It is typically read by researchers, students, and practitioners in Biochemistry, Genetics and Molecular Biology.
- Author
- Helena F Deus; Miriã C Correa; Romesh Stanislaus; Maria Miragaia; Wolfgang Maass; Hermínia de Lencastre; Ronan Fox; Jonas S Almeida
- Publisher
- BioMed Central; Springer (Biomed Central Ltd.); [London]: BioMed Central, [2000]-; Springer Science and Business Media LLC; Society for Mining, Metallurgy and Exploration Inc. (ISSN 1471-2105)
- Published
- 2011
- Language
- EN
- Field
- Biochemistry, Genetics and Molecular Biology (Life Sciences)