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OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results by Harald Barsnes; Steffen Huber; Albert Sickmann; Ingvar Eidhammer; Lennart Martens is a Biochemistry, Genetics and Molecular Biology article available to read on EtoBox.
What is OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results about?
## Abstract Protein identification by MS is an important technique in both gel‐based and gel‐free proteome studies. The Open Mass Spectrometry Search Algorithm (OMSSA) (http://pubchem.ncbi.nlm.nih.gov/omssa) is an open‐source search engine that can be used to identify MS/MS spectra acquired in these experiments. We here present a lightweight, open‐source Java software library, OMSSA Parser (http://code.google.com/p/omssa‐parser), which parses OMSSA omx result files into easy accessible and fully functional object models. In addition, we also provide examples illustrating the usage of our library.
Who reads OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results?
It is typically read by researchers, students, and practitioners in Biochemistry, Genetics and Molecular Biology.
- Author
- Harald Barsnes; Steffen Huber; Albert Sickmann; Ingvar Eidhammer; Lennart Martens
- Publisher
- John Wiley and Sons; Wiley (John Wiley & Sons); John Wiley & Sons Ltd.; Wiley; Research Square (ISSN 1615-9853)
- Published
- 2009
- Language
- EN
- Field
- Biochemistry, Genetics and Molecular Biology (Life Sciences)