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KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities by João V S Guerra; Helder V Ribeiro-Filho; José G C Pereira; Paulo S Lopes-de-Oliveira is a Biochemistry, Genetics and Molecular Biology article available to read on EtoBox.

What is KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities about?

## Abstract Molecular interactions that modulate catalytic processes occur mainly in cavities throughout the molecular surface. Such interactions occur with specific small molecules due to geometric and physicochemical complementarity with the receptor. In this scenario, we present KVFinder-web, an open-source web-based application of parKVFinder software for cavity detection and characterization of biomolecular structures. The KVFinder-web has two independent components: a RESTful web service and a web graphical portal. Our web service, KVFinder-web service, handles client requests, manages accepted jobs, and performs cavity detection and characterization on accepted jobs. Our graphical web portal, KVFinder-web portal, provides a simple and straightforward page for cavity analysis, which customizes detection parameters, submits jobs to the web service component, and displays cavities and characterizations. We provide a publicly available KVFinder-web at https://kvfinder-web.cnpem.br, running in a cloud environment as docker containers. Further, this deployment type allows KVFinder-web components to be configured locally and customized according to user demand. Hence, users may run

Who reads KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities?

Author

João V S Guerra; Helder V Ribeiro-Filho; José G C Pereira; Paulo S Lopes-de-Oliveira

Publisher

Oxford University Press (OUP)

Published

2023

Language

EN

Field

Biochemistry, Genetics and Molecular Biology (Life Sciences)