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An Improved Heuristic Algorithm for Finding Motif Signals in DNA Sequences by Chao-wen Huang; Wun-shiun Lee; Sun-yuan Hsieh is a Biochemistry, Genetics and Molecular Biology article available to read on EtoBox.

What is An Improved Heuristic Algorithm for Finding Motif Signals in DNA Sequences about?

The planted ðl; dÞ-motif search problem is a mathematical abstraction of the DNA functional site discovery task. In this paper, we propose a heuristic algorithm that can find planted ðl; dÞ-signals in a given set of DNA sequences. Evaluations on simulated data sets demonstrate that the proposed algorithm outperforms current widely used motif finding algorithms. We also report the results of experiments on real biological data sets.

Who reads An Improved Heuristic Algorithm for Finding Motif Signals in DNA Sequences?

Author

Chao-wen Huang; Wun-shiun Lee; Sun-yuan Hsieh

Publisher

IEEE; Institute of Electrical and Electronics Engineers; IEEE Computer Society; Institute of Electrical and Electronics Engineers (IEEE) (ISSN 1545-5963)

Published

2011

Language

EN

Field

Biochemistry, Genetics and Molecular Biology (Life Sciences)