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Neurodesk: an Accessible, Flexible and Portable Data Analysis Environment for Reproducible Neuroimaging by Angela I. Renton; Thuy T. Dao; Tom Johnstone; Oren Civier; Ryan P. Sullivan; David J. White; Paris Lyons; Benjamin M. Slade; David F. Abbott; Toluwani J. Amos; Saskia Bollmann; Andy Botting; Megan E. J. Campbell; Jeryn Chang; Thomas G. Close; Monika Dörig; Korbinian Eckstein; Gary F. Egan; Stefanie Evas; Guillaume Flandin; Kelly G. Garner; Marta I. Garrido; Satrajit S. Ghosh; Martin Grignard; Yaroslav O. Halchenko; Anthony J. Hannan; Anibal S. Heinsfeld; Laurentius Huber; Matthew E. Hughes; Jakub R. Kaczmarzyk; Lars Kasper; Levin Kuhlmann; Kexin Lou; Yorguin-Jose Mantilla-Ramos; Jason B. Mattingley; Michael L. Meier; Jo Morris; Akshaiy Narayanan; Franco Pestilli; Aina Puce; Fernanda L. Ribeiro; Nigel C. Rogasch; Chris Rorden; Mark M. Schira; Thomas B. Shaw; Paul F. Sowman; Gershon Spitz; Ashley W. Stewart; Xincheng Ye; Judy D. Zhu; Aswin Narayanan; Steffen Bollmann is a Biochemistry, Genetics and Molecular Biology article available to read on EtoBox.

What is Neurodesk: an Accessible, Flexible and Portable Data Analysis Environment for Reproducible Neuroimaging about?

Neuroimaging data analysis often requires purpose-built software, which can be challenging to install and may produce different results across computing environments. Beyond being a roadblock to neuroscientists, these issues of accessibility and portability can hamper the reproducibility of neuroimaging data analysis pipelines. Here, we introduce the Neurodesk platform, which harnesses software containers to support a comprehensive and growing suite of neuroimaging software (https://www.neurodesk.org/). Neurodesk includes a browseraccessible virtual desktop environment and a command line interface, mediating access to containerized neuroimaging software libraries on various computing platforms, including personal and high-performance computers, cloud computing and Jupyter Notebooks. This community-oriented, open-source platform enables a paradigm shift for neuroimaging data analysis, allowing for accessible, flexible, fully reproducible, and portable data analysis pipelines.

Who reads Neurodesk: an Accessible, Flexible and Portable Data Analysis Environment for Reproducible Neuroimaging?

Author

Angela I. Renton; Thuy T. Dao; Tom Johnstone; Oren Civier; Ryan P. Sullivan; David J. White; Paris Lyons; Benjamin M. Slade; David F. Abbott; Toluwani J. Amos; Saskia Bollmann; Andy Botting; Megan E. J. Campbell; Jeryn Chang; Thomas G. Close; Monika Dörig; Korbinian Eckstein; Gary F. Egan; Stefanie Evas; Guillaume Flandin; Kelly G. Garner; Marta I. Garrido; Satrajit S. Ghosh; Martin Grignard; Yaroslav O. Halchenko; Anthony J. Hannan; Anibal S. Heinsfeld; Laurentius Huber; Matthew E. Hughes; Jakub R. Kaczmarzyk; Lars Kasper; Levin Kuhlmann; Kexin Lou; Yorguin-Jose Mantilla-Ramos; Jason B. Mattingley; Michael L. Meier; Jo Morris; Akshaiy Narayanan; Franco Pestilli; Aina Puce; Fernanda L. Ribeiro; Nigel C. Rogasch; Chris Rorden; Mark M. Schira; Thomas B. Shaw; Paul F. Sowman; Gershon Spitz; Ashley W. Stewart; Xincheng Ye; Judy D. Zhu; Aswin Narayanan; Steffen Bollmann

Publisher

Springer Science and Business Media LLC

Published

2024

Language

EN

Field

Biochemistry, Genetics and Molecular Biology (Life Sciences)