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Protecs, a comprehensive and powerful storage and analysis system for OMICS data, applied for profiling the anaerobiosis response of Staphylococcus aureus COL by Stephan Fuchs; Henry Mehlan; Harald Kusch; Alexander Teumer; Daniela Zühlke; Matthias Berth; Carmen Wolf; Thomas Dandekar; Michael Hecker; Susanne Engelmann; Jörg Bernhardt is a Biochemistry, Genetics and Molecular Biology article available to read on EtoBox.

What is Protecs, a comprehensive and powerful storage and analysis system for OMICS data, applied for profiling the anaerobiosis response of Staphylococcus aureus COL about?

## Abstract Broad functional genomic studies call for comprehensive and powerful data repositories for storage of genome sequences, experimental information, protein identification data, protein properties and expression values. The better such data repositories can integrate and display complex data in a clear and structured way the more biologically meaningful conclusions or novel hypotheses can be derived from extensive omics data sets. This work presents the web accessible database system Protecs and how it was used to support analysis of 50 samples drawn from four __Staphylococcus aureus__ cultivations under anaerobiosis. Protecs incorporates findings from visualization science, __e.g__. micro charts and heat maps in the user interface. Its integrated tools for expression data analysis in combination with TIGR Multi Experiment Viewer were used to highlight similar gene expression profiles in single or multiple experiments based on the continuously updated __S. aureus__ master gel. Raw data analysis results are available online at www.protecs.uni‐greifswald.de. Our meta‐study revealed that __S. aureus__ responds in different anaerobiotic experimental setups (growth without oxyg

Who reads Protecs, a comprehensive and powerful storage and analysis system for OMICS data, applied for profiling the anaerobiosis response of Staphylococcus aureus COL?

Author

Stephan Fuchs; Henry Mehlan; Harald Kusch; Alexander Teumer; Daniela Zühlke; Matthias Berth; Carmen Wolf; Thomas Dandekar; Michael Hecker; Susanne Engelmann; Jörg Bernhardt

Publisher

John Wiley and Sons; Wiley (John Wiley & Sons); John Wiley & Sons Ltd.; Wiley; Research Square (ISSN 1615-9853)

Published

2010

Language

EN

Field

Biochemistry, Genetics and Molecular Biology (Life Sciences)